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Biology mr hoyle genetics and obesity – Publications by GMB Students

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  • Augmentation of leptin and hypoxia-inducible factor 1 alpha mRNAs in the pre-eclamptic placenta. Settled over 14, years ago by Native Americans, South America has experienced migrations of European and African individuals, similar to other regions in the Americas.

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The second results from the findings of placental perfusion studies. Kennewick Man, referred to as the Ancient One by Native Americans, obseity a male human skeleton discovered in Washington state USA in and initially radiocarbon dated to 8, calibrated years before present BP. While the demographic past of rainforest hunter-gatherers has been deeply characterized, important aspects of their history of genetic adaptation remain unclear. Serum leptin profiles in the normal menstrual cycles and gonadotropin treatment cycles.

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Secretion of leptin throughout pregnancy and early postpartum period in Japanese monkeys: placenta as another potential source of leptin. The most significant peak was 6p In our simulations, GBStools improved genotype accuracy more than commonly used filters such as Hardy-Weinberg equilibrium p-values. BJOG : — Here, we demonstrate that a canonical Eurasian skin pigmentation gene, SLC24A5, was introduced to southern Africa via recent migration and experienced strong adaptive evolution in the KhoeSan. Lastly, we demonstrate that these effects can be substantially mitigated through chemical PI3K inhibitors. Our results highlight the importance of studying diverse multiethnic populations to uncover novel loci associated with total IgE levels.

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Bone, tooth and dental calculus samples were collected from individuals from three pre-contact archaeological sites: Tibes, Punta Candelero and Paso del Indio. Then, using a spatial scan statistic modified to analyze genetic variation in protein 3D space, we found significant enrichment of disease-associated variants in the converter, a kinetic domain that transduces force from the catalytic domain to the lever arm to accomplish the power stroke. We propose criteria for routine genetic screening for patients with medulloblastoma based on clinical and molecular tumour characteristics. Thus, a thorough review of this field is no longer complete without its inclusion.

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In a discovery-validation study, we identify 19 loci containing 33 genes whose imputed expression levels are associated with cSCC at false discovery rate View details for PubMedID We generated genomic data for individuals from 35 populations in western central Africa, where Bantu languages originated. Long-range relatedness among African-Americans and between African-Americans and European-Americans thus track north- and west-bound migration routes followed during the Great Migration of the twentieth century. Using our pipeline, we were able to identify Increased plasma levels of adipokines in preeclampsia: relationship to placenta and adipose tissue gene expression. Approximately 15 genes have been directly associated with skin pigmentation variation in humans, leading to its characterization as a relatively simple trait.

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He received his Ph. Additionally, we found that this variant conferred increased risk of VTE in a case-control study of African Americans. The extent to which prehistoric migrations of farmers influenced the genetic pool gfnetics western North Africans remains unclear. Specific receptors in the uterine endometrium, trophoblast, and fetus facilitate direct effects of the polypeptide on implantation, placental endocrine function, and conceptus development. However, the current paucity of genetic research in people of African and Latin American ancestry, Hispanic and indigenous peoples in the United States is likely to exacerbate existing health disparities for many common diseases. Cell Metab 1 : — We make our results available through an online app and demonstrate how it can be used to adjust for ancestry when testing association between incidence of a disease and nongenetic risk factors.

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Village dogs are more genetically diverse and geographically widespread than purebred dogs making them vital for unraveling dog population history. Placenta 24 : 92 — The augmented exome strategy recovered many of these gaps, resulting in improved coverage in these areas. Here we demonstrate the value of diverse, multi-ethnic participants in large-scale genomic studies.

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Like the human, the baboon possesses a true maternal-fetoplacental unit, which relies on androgen precursors from the fetal adrenal gland for placental estrogen synthesis [ 37 ]. Nutrition 18 : — Gynecol Endocrinol 18 : —

  • To determine the possible genetic drivers of the observed morphology, DNA from the specimen was subjected to whole-genome sequencing using the Illumina HiSeq platform with an average Neonatal leptin levels are strongly associated with female gender, birth length, IGF-I levels and formula feeding.

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  • A soluble, circulating leptin receptor solLEPR is generated in humans by the proteolytic cleavage of membrane-bound receptors [ 13 ]. J Clin Endocrinol Metab 88 : —

We also identify two novel loci 8p23 and 8q24 hoyle genetics may be specific to asthma risk in African ancestry populations. These results highlight the need to sequence additional individuals within and among lineages. It is a useful framework to improve clinical variant curation. We deployed the population caller on the Amazon cloud with the DNAnexus platform in order to achieve low-cost variant calling. There was also striking disparity across REA populations in the amount of information available about clinically relevant variants in gnomAD. Second, we conducted semi-structured interviews of 19 key-informants from 10 Mexican states remotely with digital recording and transcription. Finally, using a common genotype matrix, we show that eigenMT can be applied with even greater efficiency to studies across tissues or conditions.

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Leptin alters the structural and functional characteristics of adipose tissue before birth. As previously documented [9—11, 19—21], serum leptin concentrations are elevated throughout human pregnancy. Combining demographic models of ancestry and those of relatedness suggests that admixture occurred predominantly in the South prior to the Civil War and that ancestry-biased migration is responsible for regional differences in ancestry. Leptin requirement for conception, implantation, and gestation in the mouse. The augmented exome strategy recovered many of these gaps, resulting in improved coverage in these areas. Concentrations of leptin in the serum of pregnant, lactating, and cycling rats and of leptin messenger ribonucleic acid in rat placental tissue. We constructed a calibrated phylogenetic tree on the basis of binary single-nucleotide variants and projected the more complex variants onto it, estimating the number of mutations for each class.

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Leptin levels in women suffering spontaneous abortions in the first trimester were abnormally low, implying a direct role for the polypeptide in pregnancy maintenance [ ]. Therefore, we collected placental villous obesit, omental adipose tissue, and subcutaneous adipose tissue from baboons in late Day pregnancy [ ]. In pregnant humans and nonhuman primates, leptin is produced by both maternal and fetal adipose tissues, as well as by the placental trophoblast. Moreover, the genome will serve as the foundation for addressing key questions in behavior, physiology, toxicology, and evolutionary biology. Biochem Biophys Res Commun : —

After their arrival to the Americas, ancestral Native Americans diversified into two basal genetic branches around 13 ka, one that is now dispersed across North and South America and the other restricted to North America. In addition, we identify four new Canarian-specific lineages H1e1a9, H4a1e, J2a2d1a and L3b1a12 whose coalescence dates correlate with the estimated time for the colonization of the islands 1st millennia CE. Leptin and leptin receptor are expressed in the human endometrium and endometrial leptin secretion is regulated by the human blastocyst. These events are typically inferred from the relative amount of X-chromosomal to autosomal genetic variation and have led to conflicting conclusions about human demographic history. The cultural and genetic similarities between Iberian and North African Neolithic traditions further reinforce the model of an Iberian migration into the Maghreb.

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We sequenced lisa sellers obese death genome to Article Navigation. Our results demonstrate that modeling population size change is necessary to estimate sex-bias geneics accurately. Because leptin receptor is expressed in maternal decidua and the uterine endometrium is identified as a target for leptin action, a definitive role is suggested in the blastocyst-endometrial dialogue [64—67]. A resurgent corpus luteum and decidual tissue were also collected on Dayas was fetal brain hypothalamic region. One mechanism by which noncoding single nucleotide variants SNVs influence downstream phenotypes is through the regulation of gene expression. Jr, Ratterree MS, Henson MC, Leptin receptor transcripts are constitutively expressed in placenta and adipose tissue with advancing baboon pregnancy.

Alpha-2 to beta-3 adrenoceptor switch in 3T3-L1 preadipocytes and adipocytes: modulation by testosterone, beta estradiol, and progesterone. Bioloogy data are available at Bioinformatics online. Several limited molecular genetic studies have reached opposing conclusions, and the possibility continues to be as hotly contested today as it was when first suggested Leptin receptor expression in fetal lung increases in late gestation in the baboon: a model for human pregnancy.

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Our data are an important resource for empowering disease mapping studies in African-admixed individuals and will facilitate gene discovery for diseases disproportionately affecting individuals of African ancestry. In this respect, lung development in male fetuses is somewhat delayed when compared with females in many species, a phenomenon that reflects an inhibition by androgens [ 93 ]. Cella FGiordano GCordera RSerum leptin concentrations during the menstrual cycle in normal-weight women: effects of an oral triphasic estrogen-progestin medication.

  • The placenta is not the main source of leptin production in pregnant rat: gestational profile of leptin in plasma and adipose tissues. Accurate prediction of the functional effect of genetic variation is critical for clinical genome interpretation.

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  • We combined these data with population reference panels from Africa, Asia, Europe and the Americas to perform global ancestry analysis and infer the subcontinental origin of the European and Native American ancestry components of the admixed individuals.

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Stretch-stimulated surfactant synthesis is coordinated by the paracrine actions of PTHrP and leptin. Gynecol Endocrinol 18 : — Bio,ogy, we found that this variant conferred increased risk of VTE in a case-control study of African Americans. Then, using a spatial scan statistic modified genstics analyze genetic variation in protein 3D space, we found significant enrichment of disease-associated variants in the converter, a kinetic domain that transduces force from the catalytic domain to the lever arm to accomplish the power stroke. To meet this goal, the Multi-Ethnic Genotyping Array MEGA was designed to substantially improve fine-mapping and functional discovery by increasing variant coverage across multiple ethnicities at known loci for metabolic, cardiovascular, renal, inflammatory, anthropometric, and a variety of lifestyle traits. Transcriptome and proteome dynamics of cervical remodeling in the mouse during pregnancy. We also found that genetic adaptation of Bantu speakers was facilitated by admixture with local populations, particularly for the HLA and LCT loci.

Henson, V. Our analyses show that domesticated populations of T. However, clinicians lack the time and resource to annotate patient records with standard medical diagnostic codes and most veterinary visits are captured in free-text notes. However, the timing and magnitude of these events resulted in markedly different patterns of admixture throughout Latin America.

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The KBTBD8 gene has been associated with idiopathic short stature and we found it to be highly differentiated in Triqui, a southern indigenous group biology mr hoyle genetics and obesity Oaxaca whose height genetixs extremely low compared to other Native populations. Thus, a thorough review of this field is no longer complete without its inclusion. Role of premature leptin surge in obesity resulting from intrauterine undernutrition. Overall, our analyses provided insights into transcriptional variation in a unique system, in which adaptation to H2 S and darkness coincide. Hum Reprod 16 : —

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Functional annotations of differentially expressed genes provide a springboard for investigating physiological mechanisms genetiics underlying adaptation to extreme environments. More variation was uncovered than in studies using microsatellite data because of the resolution of full genome sequencing data. Despite the pronounced differences in gut bacterial composition across populations, we found little differences in alpha diversity across lifestyles.

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We also examine array design strategies that contrast multi-ethnic cohorts versus single populations, and show a boost in performance for the former can be obtained by prioritizing tag SNPs that contribute information across multiple populations simultaneously. Subsequent craniometric analysis affirmed Kennewick Man to be more closely related to circumpacific groups such as the Ainu and Polynesians than he is to modern Native Americans. Other regulatory parallels include the effects of glucocorticoids, which, in addition to upregulating the putative FPF in the lung [ 89 ], increase leptin production by human adipocytes [ 96 ] and enhance leptin levels in preterm infants [ 97 ]. However, this effect has not yet been reported in syncytiotrophoblast collected in early pregnancy, or in long-term cultures of either purified cyto- or syncytiotrophoblast collected in the second trimester or at term. Regulation of circulating soluble leptin receptor levels by gender, adiposity, sex steroids, and leptin.

Between andmore than 12 million enslaved Africans were transported to the New World. Protein-truncating variants can have profound effects on gene function and are critical for clinical genome interpretation and generating therapeutic hypotheses, but their relevance to medical phenotypes has not been systematically assessed. European, Amerindian and African. Digitization of human and veterinary health information will continue to be a reality, particularly in the form of unstructured narratives. Unstructured clinical narratives are continuously being recorded as part of delivery of care in electronic health records, and dedicated tagging staff spend considerable effort manually assigning clinical codes for billing purposes. Accordingly, there was little evidence for convergent evolution shaping large-scale gene expression patterns among independent sulfide spring populations.

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In the mouse, although leptin transcripts may be expressed in both the placenta and fetus [ 34 ], the polypeptide does not appear to exert any physiological effects in either. Concentrations of leptin in the serum of pregnant, lactating, and cycling rats and of leptin messenger ribonucleic acid in rat placental tissue. Our full phylogenetic tree is based on the most comprehensive mitogenomic dataset for Callitrichidae species to date, adding new data for the Leontopithecus genus, and discussing previous studies performed on primates. Hibernation in sciurid rodents is a dynamic phenotype timed by a circannual clock. NE uses a doubly stochastic matrix operator that induces sparsity and provides a closed-form solution that increases spectral eigengap of the input network.

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Our results highlight the importance of studying diverse multiethnic populations to uncover novel loci associated with total IgE levels. In ovine pregnancy, lisa sellers obese death with cortisol or dexamethasone increased fetal leptin concentrations, while adrenalectomy suppressed them [ ], an effect reminiscent of the impaired leptin production in glucocorticoid-deficient mice [ ]. J Clin Endocrinol Metab 89 : — Even in preeclamptic women that had not yet evidenced elevated peripheral leptin levels, ratios of amniotic fluid leptin to maternal serum leptin were elevated and identified the very early stages of the condition [ ]. Perigestational suppression of weight gain with central leptin gene therapy results in lower weight F1 generation.

Biol Reprod 65 : — A new study highlights the biases and inaccuracies of polygenic risk scores PRS when predicting disease risk in individuals from populations other than those used and obesity their derivation. The lack of standard coding makes it challenging to use the clinical data to improve patient care. Reduced representation sequencing methods such as genotyping-by-sequencing GBS enable low-cost measurement of genetic variation without the need for a reference genome assembly. Regulatory mechanisms are linked to gender, as women of reproductive age exhibit higher serum concentrations than comparably aged men. The relationship between leptin concentration and bone metabolism in the human fetus.

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Given the rapid expansion of genetic and genomic services, understanding the current genetic counseling landscape in Mexico is crucial to improving healthcare outcomes. Female rats that biology mr hoyle genetics and obesity injected with a recombinant adeno-associated virus vector that encoded the leptin gene, evidenced decreased food intake and commensurate loss of body weight, traits that were maintained throughout their subsequent breeding, pregnancies, and deliveries. These associations were robust to adjustment for covariates related to early life exposures, air pollution, and socioeconomic status. Biochem Soc Trans 29 : 57 —

We find evidence for a strong, shared selective sweep among all hunter-gatherer groups in the regulatory region of TRPS1-primarily involved in morphological traits. Ans 16 associated bioloyy detected in the mouse brain, genetics and obesity are conserved in human. Previously, rare mutations in low-density lipoprotein LDL genes have been shown to contribute to MI risk in individual families, whereas common variants at more than 45 loci have been associated with MI risk in the population. This agrees with prior reports that LEPR L transcripts typically occur in lesser abundance in peripheral tissues than those encoding short intracellular domain forms [ 12 ]. Indeed, recombinant leptin infused into the fetal circulation inhibited activation of the HPA axis in late ovine pregnancy, suggesting that mechanisms controlling the initiation of labor might be fine tuned by a metabolic cue that is related to fetal growth and originates in the placenta or fetal adipocytes [ ]. Dehydroepiandrosterone inhibits the amplification of glucocorticoid action in adipose tissue. On the basis of the identified genetic effects, we characterize patterns of tissue specificity, compare local and distal effects, and evaluate the functional properties of the genetic effects.

Our study provides a model for integrating protein structure, large-scale genetic sequencing, and hoyle genetics phenotypic data to reveal insight into time-shifted protein structures and genetic disease. Oxford Academic. We discovered more than 65, variants, including single-nucleotide variants, multiple-nucleotide variants, insertions and deletions, short tandem repeats, and copy number variants. Additionally, effect sizes and their derived risk prediction scores derived in one population may not accurately extrapolate to other populations11, The six samples show different levels of initial endogenous content, with very low View details for PubMedID Yang SWKim SYThe relationship of the levels of leptin, insulin-like growth factor-I and insulin in cord blood with birth size, ponderal index, and gender difference.

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Several limited molecular genetic studies have bkology opposing conclusions, and the possibility continues to be as hotly contested today as it was when first suggested We next identified 4 admixture mapping peaks 6p Mol Cell Biology mr hoyle genetics and obesity : 67 — Our results indicate conserved mechanisms that can produce distant but phased features on transcript and proteome isoforms. Enhanced expression of LEP mRNA transcripts in placental tissue from preeclamptic women, over that of tissue from women with normal pregnancies, did not extend to a similar upregulation in maternal subcutaneous adipose tissue, further suggesting a specificity of placental involvement [ ]. This putative protein regulator promotes surfactant production and is downregulated by androgens [ 90 ], similarities that exist between it and leptin.

Here we present genetic variation from deeply sequenced genomes of individuals from North and South American, Caribbean and West African populations, substantially increasing the lexicon of human genomic variation and suggesting much variation remains to be discovered in African-admixed populations in the Americas. Serum leptin concentrations and expression of leptin transcripts in placental trophoblast with advancing baboon pregnancy. Pituitary 4 : 93 — Biochem Soc Trans 29 : 57 — We find conclusive evidence for prehistoric contact of Polynesianindividuals with Native Americanindividuals around AD contemporaneouswith the settlement of remote Oceania

Endocr Res 30 : — Int J Epidemiol 31 : — Next-generation sequencing technologies are fueling a wave of new diagnostic tests. Leptin distribution and metabolism in the pregnant rat: transplacental leptin passage increases in late gestation but is reduced by excess glucocorticoids. Whole-genome sequences and exome sequences from blood and tumour samples were analysed for rare damaging germline mutations in cancer predisposition genes.

  • We find conclusive evidence for prehistoric contact of Polynesianindividuals with Native Americanindividuals around AD contemporaneouswith the settlement of remote Oceania Between andmore than 12 million enslaved Africans were transported to the New World.

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  • Based on spatial distributions and diversity patterns within the R1a-M clade, particularly rare basal branches detected primarily within Iran and eastern Turkey, we conclude that the initial episodes of haplogroup R1a diversification likely occurred in the vicinity of present-day Iran.

  • We conclude that the fetal genetic contribution to PTB is unlikely due to single common genetic variant, but could genetics and explained by interactions of multiple common variants, or of rare variants affected by environmental influences, all not detectable using a GWAS alone. We identified proportions and patterns of European, African and Native American ancestry and found a correlation between distance to Buenos Aires and proportion of Native American ancestry, where the highest proportion corresponds to the Northernmost populations, which is also the furthest from the Argentinian capital.

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Village dogs are more genetically diverse and geographically widespread than purebred dogs making them vital for unraveling dog population history. Rev Reprod 5 : 18 — Our results highlight the importance of studying diverse biology hoyle populations to uncover novel loci associated with total IgE levels. On the basis of the identified genetic effects, we characterize patterns of tissue specificity, compare local and distal effects, and evaluate the functional properties of the genetic effects. Finally, using a common genotype matrix, we show that eigenMT can be applied with even greater efficiency to studies across tissues or conditions. Subsequent observations from monochorionic twin pregnancies revealed that fetal and cord leptin levels were at least 2-fold higher in normal-size fetuses than in their growth-restricted twins [ ], indicating a pivotal role in regulating growth [ ]. Genome-wide association studies GWAS have laid the foundation for investigations into the biology of complex traits, drug development and clinical guidelines.

The average turnaround time was 56days. Yuen et al. Genome assembly of the mangrove rivulus allows the study of genes and gene families associated with the traits described above. The logical presumption of a placental contribution to maternal hyperleptinemia can also be traced to two other observations.

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We observed coverage shortfalls with each of the conventional exome-capture and whole-genome platforms across several medically interpretable genes. However, the majority of discovery efforts are based on data from populations of European ancestry To better distinguish true from false positive calls, gebetics present a method that uses genotype array data from the sequenced samples, rather than public data such as HapMap or dbSNP, to train an accurate classifier using Random Forests. Leptin expression in placental and fetal tissues: does leptin have a functional role? We hypothesized that genetic factors instead drive variation in timing. View full details. The vast majority of coding variants are rare, and assessment of the contribution of rare variants to complex traits is hampered by low statistical power and limited functional data.

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